Computational Biology

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Shorty Assembler - References

ABI Solid Data

1. http://www.algorithm.cs.sunysb.edu/charles/

2. http://www3.appliedbiosystems.com/AB_Home/applicationstechnologies/

3. http://solidsoftwaretools.com/gf/?

4. http://www.ncbi.nlm.nih.gov/sites/entrez

5. http://solidsoftwaretools.com/gf/project/

Solexa Data

1. http://www.ncbi.nlm.nih.gov/sites/entrez?db=sra&term=solexa

2. ftp://ftp.ncbi.nlm.nih.gov/sra/static/SRX003/SRX003935/

3. http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=faspftp_seqsamples&m=downloads&s=download_fastq

4. ftp://ftp.ncbi.nlm.nih.gov/sra/SeqSamples/ERS000/ERS000013/ERX000013/

Helicos Data

1. http://open.helicosbio.com/mwiki/index.php/Datasets

General

1. Shorty Paper 1

2. Shorty Paper 2

3. Sequencing Forum

4. All micro bacteria ftp links

5. Bioperl installation

6. Abyss Assembler

7. Standardized-velvet-assembly report

8. Download velvet assembler