Course Description

The course will cover core concepts of probability theory and an assortment of standard statistical techniques. Specific topics will include random variables and distributions, quantitative research methods (correlation and regression), and modern techniques of optimization and matching learning (clustering and prediction).

More informally, this 3-credit, grad-level course covers probability and statistics topics required for data scientists to analyze and interpret data. The course is also part of the Data Science and Engineering Specialization. The course is targeted primarily at PhD and Masters students in the Computer Science Department. Topics covered include Probability Theory, Random Variables, Stochastic Processes, Statistical Inference, Hypothesis Testing, Regression, and Time Series Analysis. For more details, refer to the syllabus below.

The class is in-person, and is expected to be interactive and students are encouraged to participate in class discussions.

Grading will be on a curve, and will be based on assignments, exams, and a semester-end mini data analysis project. For more details, see the section on grading below.

Prerequisites: There are no formal prerequisites, but comfort in probability theory and proficiency with Python (since programming assignments tasks will be in Python) will be helpful.

Learning Objectives: Students taking this course will learn the necessary probability and statistical techniques and skills required for data scientists and quantitative analysts. At the completion of the course, students will be able to answer questions such as "what distribution does the data follow?", "how to estimate the parameters of a data distribution?", "do the two data populations come from the same distribution?". Additionally, students will be able to provide a measure of confidence or statistical significance when answering these questions. Finally, students will be able to implement techniques that answer the above questions using Python programming.

Syllabus & Schedule

Date	Topic	Readings	Notes
Jan 28 (Tu) [Lec 01]	Course introduction, class logistics
Jan 30 (Th) [Lec 02]	Probability review - 1 Basics: sample space, outcomes, probability Events: mutually exclusive, independent Calculating probability: sets, counting, tree diagram	AoS 1.1 - 1.5 MHB 3.1 - 3.4
Feb 04 (Tu) [Lec 03]	Probability review - 2 Conditional probability Law of total probability Bayes' theorem	AoS 1.6, 1.7 MHB 3.3 - 3.6	assignment 1 out, due Feb 12
Feb 06 (Th) [Lec 04]	Random variables - 1: Overview and Discrete RVs Discrete and Continuous RVs Mean, Moments, Variance pmf, pdf, cdf Discrete RVs: Bernoulli, Binomial, Geometric, Indicator	AoS 2.1 - 2.3, 3.1 - 3.4 MHB 3.7 - 3.9
Feb 11 (Tu) [Lec 05]	Random variables - 2: Continuous RVs Uniform(a, b) Exponential(λ) Normal(μ, σ2), and its several properties	AoS 2.4, 3.1 - 3.4 MHB 3.7 - 3.9, 3.14.1	Python scripts: draw_Bernoulli, draw_Binomial, draw_Geometric, draw_Uniform, draw_Exponential, draw_Normal
Feb 13 (Th) [Lec 06]	Random variables - 3: Joint distributions & conditioning Joint probability distribution Linearity of expectation	AoS 2.5 - 2.8 MHB 3.10 - 3.13, 3.15	assignment 2 out, due Feb 28
Feb 18 (Tu) [Lec 07]	Random variables - 4: Joint distributions & conditioning Independent random variables Product of expectation Conditional expectation	AoS 2.5 - 2.8 MHB 3.10 - 3.13, 3.15
Feb 20 (Th) [Lec 08]	Probability Inequalities Weak Law of Large Numbers Central Limit Theorem	AoS 5.3, 5.4 MHB 3.14.2, 5.2
Feb 25 (Tu) [Lec 09]	Markov chains Stochastic processes Setting up Markov chains Balance equations	AoS 23.1 - 23.3 MHB 8.1 - 8.7
Feb 27 (Th) [Lec 10]	Non-parametric inference - 1 Basics of inference Simple examples Empirical PMF Sample mean bias, se, MSE	AoS 6.1 - 6.2, 6.3.1	assignment 3 out, due March 9 Required data: firstFreezing.csv, a3_q6_kde_estimate_bimodal.ipynb a3_q5_parametric_bootstrapping.ipynb
Mar 04 (Tu) [Lec 11]	Non-parametric inference - 2 Empirical Distribution Function (or eCDF) Kernel Density Estimation (KDE) Statistical Functionals Plug-in estimator	AoS 7.1 - 7.2	Python scripts: sample_Bernoulli, sample_Binomial, sample_Geometric, sample_Uniform, sample_Exponential, sample_Normal, draw_eCDF
Mar 06 (Th) [Lec 12]	Non-parametric inference - 3 Percentiles, quantiles Normal-based confidence intervals DKW inequality Bootstrapping	AoS 6.3.2, 7.1, 8 - 8.3
Mar 11 (Tu)	M1 review
Mar 13 (Th)	Mid-term 1		In-class
Mar 18 (Tu)	No class		Spring Break
Mar 20 (Th)	No class		Spring Break
Mar 25 (Tu) [Lec 13]	Parametric inference - 1 Consistency, Asymptotic Normality Basics of parametric inference Method of Moments Estimator (MME)	AoS 6.3.1 - 6.3.2, 9.1 - 9.2
Mar 27 (Th) [Lec 14]	Parametric inference - 2 Properties of MME Basics of MLE Maximum Likelihood Estimator (MLE) Properties of MLE	AoS 9.3, 9.4, 9.6	assignment 4 out, due April 7 Required data: penguin dataset, q6_a.csv, q6_b_X.csv, q6_b_Y.csv
Apr 01 (Tu) [Lec 15]	Hypothesis testing - 1 Basics of hypothesis testing Wald test	AoS 10 - 10.1 DSD 5.3.1
Apr 03 (Th) [Lec 16]	Hypothesis testing - 2 Type I and Type II errors Wald test	AoS 10 - 10.1 DSD 5.3.1
Apr 08 (Tu) [Lec 17]	Hypothesis testing - 3 Z-test t-test	AoS 10.10.2 DSD 5.3.2	assignment 5 out, due April 21 Required data: confFileSizes.dat
Apr 10 (Th) [Lec 18]	Hypothesis testing - 4 Kolmogorov-Smirnov test (KS test) p-values Permutation test	AoS 15.4, 10.2, 10.5 DSD 5.3.3, 5.5
Apr 15 (Tu) [Lec 19]	Hypothesis testing - 5 Pearson correlation coefficient Chi-square test for independence	AoS 3.3, 10.3 - 10.4 DSD 2.3
Apr 17 (Th) [Lec 20]	Bayesian inference - 1 Bayesian reasoning Bayesian inference	AoS 11.1 - 11.2, 11.6 DSD 5.6	Example plots
Apr 22 (Tu) [Lec 21]	Bayesian inference - 2 Priors Conjugate priors	AoS 11.1 - 11.2, 11.6 DSD 5.6	assignment 6 out, due May 02 Required data: q2.dat, gpu_dataset, q5.csv
Apr 24 (Th) [Lec 22]	Regression - 1 Basics of Regression Simple Linear Regression	AoS 13.1, 13.3 - 13.4 DSD 9.1
Apr 29 (Tu) [Lec 23]	Regression - 2 Multiple Linear Regression	AoS 13.5 DSD 9.1
May 01 (Th) [Lec 24]	Time Series Analysis EWMA Time Series modeling AR Time Series modeling
May 06 (Tu)	M2 review
May 08 (Th)	Mid-term 2		In-class

Resources

• Required text: (AoS) "All of Statistics : A Concise Course in Statistical Inference" by Larry Wasserman (Springer publication).
• Students are strongly suggested to purchase a copy of this book.
• Recommended text: (MHB) "Performance Modeling and Design of Computer Systems: Queueing Theory in Action" by Mor Harchol-Balter (Cambridge University Press)
• Suggested for probability review and stochastic processes.
• There is copy placed on reserve in the library. The instructor also has a few personal copies that you can borrow.
• Recommended text: (Prob) "Introduction to Probability for Computing" by Mor Harchol-Balter (Cambridge University Press)
• Suggested for basic probability review.
• pdf of individual chapters is available online at the author's link above.
• Recommended text: (DSD) "The Data Science Design Manual" by (our very own) Steven Skiena (Springer publication).
• Suggested for data science topics in the second half of the course.


• Others:
• S.M. Ross, Introduction to Probability Models, Academic Press
• S.M. Ross, Stochastic Processes, Wiley

Grading (tentative)

• Assignments: 30%
• 6 assignments during the semester, each accounting for 5% of the grade. Expect 5-7 questions per assignment, including some programming questions.
• Collaboration is allowed (max group size 4). You are free to form your own groups, and group membership can change between assignments.
• Submit one softcopy (e.g., PDF or doc) solution per group, typed or handwritten, but should be legible. Should include all required plots and work. Include group member names and ID numbers on the first page.
• Assignments are due via Brightspace, at 11:59pm. For example, if A1 has a due date of Feb 12, that means it is due by 11:59pm on Feb 12th. No late submissions allowed. Brightspace will automatically flag your submission as late if it is received after the 11:59pm deadline.
• One person per group (not all) should submit the softcopy on Brightspace under the designated assigment number.


• Exams: 65%
• Two exams, in-person.
• Mid-term 1: 30%.
• Mid-term 2: 35%.
• These will be closed-notes, closed-book, and in-person exams.
• Easier than the assignments but the questions will be on the same lines.


• Mini group project: 5%
• One semester-end project to be done in groups. The project work is expected to begin in the last month of the course and will be due during finals exam week.
• Further details on the project will be provided in class around early April.


• Attendance: 0%
• Attendance is not required but strongly encouraged.
• Lectures will not be recorded.
• Exam questions are often based on class discussions, so attendance is helpful!

Important:

• Academic dishonesty will immediately result in an F and the student will be referred to the Academic Judiciary. See below section on Academic Integrity.
• Grading will be on a curve.
• Assignment of grades by the instructor will be final; no regrading requests will be entertained.
• There is a University policy on grading, as well as a set of grading guidelines agreed upon by the CS faculty.
  No exceptions will be made for any student and no special circumstances will be entertained.

Academic Integrity Statement

Each student must pursue his or her academic goals honestly and be personally accountable for all submitted work. Representing another person's work as your own is always wrong. Faculty is required to report any suspected instances of academic dishonesty to the Academic Judiciary. Faculty in the Health Sciences Center (School of Health Professions, Nursing, Social Welfare, Dental Medicine) and School of Medicine are required to follow their school-specific procedures. For more comprehensive information on academic integrity, including categories of academic dishonesty please refer to the academic judiciary website at http://www.stonybrook.edu/commcms/academic_integrity/index.html.

Critical Incident Management

Stony Brook University expects students to respect the rights, privileges, and property of other people. Faculty are required to report to the Office of Student Conduct and Community Standards any disruptive behavior that interrupts their ability to teach, compromises the safety of the learning environment, or inhibits students' ability to learn. Faculty in the HSC Schools and the School of Medicine are required to follow their school-specific procedures. Further information about most academic matters can be found in the Undergraduate Bulletin, the Undergraduate Class Schedule, and the Faculty-Employee Handbook.

Student Accessibility Support Center Statement

If you have a physical, psychological, medical, or learning disability that may impact your course work, please contact the Student Accessibility Support Center, Stony Brook Union Suite 107, (631) 632-6748, or at sasc@stonybrook.edu. They will determine with you what accommodations are necessary and appropriate. All information and documentation is confidential.