The Algorithm Design Manual
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Programming Challenges

The Stony Brook Algorithm Repository

Steven Skiena
Stony Brook University
Dept. of Computer Science

MSA: multiple sequence alignment

MSA is a program to perform multiple sequence alignment under the sum-of-pairs criterion. This means that the cost of a multiple alignment of n sequences is the sum of the n choose 2 costs of the implicit pairwise alignments.
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    Longest Common Substring (8)

    This page last modified on 2008-07-10 .