CAP -- Contig Assembly Program
CAP (Contig Assembly Program) by Xiaoqiu Huang is a C language program
supporting DNA shotgun sequencing, by finding the shortest common
superstring of a set of fragments.
As to performance, CAP took 4 hours to assemble 1015 fragments of a
total of 252,000
characters on a Sun SPARCstation SLC.
Certain parameters will need to be tweaked to make it
accommodate non-DNA data.
It is available by anonymous ftp from cs.mtu.edu in the
MAP (Multiple Alignment Program) also by Xiaoqiu Huang is a C language program
computes a multiple global alignment of sequences using
an iterative pairwise method.
It is also available by anonymous ftp from cs.mtu.edu in the
Download Files (local site)Offical webpage
This page last modified on 2008-07-10