CAP -- Contig Assembly Program
CAP (Contig Assembly Program) by Xiaoqiu Huang is a C language program
supporting DNA shotgun sequencing, by finding the shortest common
superstring of a set of fragments.
As to performance, CAP took 4 hours to assemble 1015 fragments of a
total of 252,000
characters on a Sun SPARCstation SLC.
Certain parameters will need to be tweaked to make it
accommodate non-DNA data.
It is available by anonymous ftp from cs.mtu.edu in the
pub/huang directory.MAP (Multiple Alignment Program) also by Xiaoqiu Huang is a C language program
computes a multiple global alignment of sequences using
an iterative pairwise method.
It is also available by anonymous ftp from cs.mtu.edu in the
pub/huang directory.
Download Files (local site)Offical webpage
Problem Links
This page last modified on 2008-07-10
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